Stem-loop gga-mir-146b

Accession

MI0003695

Description

Gallus gallus gga-mir-146b precursor miRNA

Literature search

14 open access papers mention gga-mir-146b
(59 sentences)

Sequence

235676 reads, 4181 reads per million, 5 experiments

ggacuggcugcuuggcuuUGAGAACUGAAUUCCAUAGGCGuuaaagcauccaaaaaugCCCUAUGGAUUCAGUUCUGCaguugggcagcaaauaaaccuccagcc
((.((((((((((((((...((((((((((.(((((((((((............)))).)))))))))))))))))..)))))))))))...........)))))

Structure

  a   -----------           uUG          U       -    aaagc 
gg cug           gcugcuuggcu   AGAACUGAAU CCAUAGG CGuu     a
|| |||           |||||||||||   |||||||||| ||||||| ||||      
cc gac           cgacggguuga   UCUUGACUUA GGUAUCC guaa     u
  -   cuccaaauaaa           -CG          -       C    aaacc 

Annotation confidence High

Genome context

chr6: 23143386-23143490 [+]

Mature gga-miR-146b-5p

• Accession: MIMAT0003351
• Description: Gallus gallus gga-miR-146b-5p mature miRNA
• Sequence: 19 - UGAGAACUGAAUUCCAUAGGCG - 40
• Evidence: experimental ; cloned [2]

Mature gga-miR-146b-3p

• Accession: MIMAT0003724
• Description: Gallus gallus gga-miR-146b-3p mature miRNA
• Sequence: 59 - CCCUAUGGAUUCAGUUCUGC - 78
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616