Stem-loop gga-mir-301a

Accession

MI0001240

Description

Gallus gallus gga-mir-301a precursor miRNA

Literature search

16 open access papers mention gga-mir-301a
(23 sentences)

Sequence

458249 reads, 287.0 reads per million, 220 experiments

uggcugcugguaucgcuggcUCUGACAAUGUUGCACUACUgucugcacaaauaaagCAGUGCAAUAAUAUUGUCAAAGCAUuugguuccaguc
.....(((((.((((...(((.(((((((((((((((.((..............)).))))))...))))))))).)))...)))).))))).

Structure

uggcu     u    cug   C         ---      A  gucugc 
     gcugg aucg   gcU UGACAAUGU   UGCACU CU      a
     ||||| ||||   ||| |||||||||   |||||| ||       
     ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
----c     u    uUA   A         AUA      C  aauaaa 

Annotation confidence High

Genome context

15: 428096-428188 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-301a

Mature gga-miR-301a-5p

• Accession: MIMAT0026531
• Description: Gallus gallus gga-miR-301a-5p mature miRNA
• Sequence: 21 - UCUGACAAUGUUGCACUACU - 40
• Evidence: experimental ; Illumina [3]

Mature gga-miR-301a-3p

• Accession: MIMAT0001166
• Description: Gallus gallus gga-miR-301a-3p mature miRNA
• Sequence: 57 - CAGUGCAAUAAUAUUGUCAAAGCAU - 81
• Evidence: experimental ; cloned [2], Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45