miRBase entry: mdv1-mir-M9

Stem-loop mdv1-mir-M9

Accession

MI0006987

Description

Mareks disease virus type 1 mdv1-mir-M9 precursor miRNA

Sequence

gcgguUUUUCUCCUUCCCCCCGGAGUUcacuguaucguacguuguAAACUCCGAGGGCAGGAAAAAGugc
(((.((((..((((..(((.(((((((.((((((...))))..)).))))))).))).)))))))).)))

Structure

   g    UC    UC   C       c  --    u 
gcg uUUU  UCCU  CCC CGGAGUU ac  ugua  
||| ||||  ||||  ||| ||||||| ||  |||| c
cgu AAAA  AGGA  GGG GCCUCAA ug  gcau  
   G    --    -C   A       A  uu    g

Annotation confidence Not enough data

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Genome context

AF243438.1: 8182-8251 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from mdv1-mir-M9

Name	Accession	Chromosome	Start	End	Strand	Confidence

Disease association

mdv1-mir-M9 is associated with one or more human diseases in the Human microRNA Disease Database

Disease	Description	Category	PubMed ID

Database links

Mature mdv1-miR-M9-5p

Accession	MIMAT0005979
Description	Mareks disease virus type 1 mdv1-miR-M9-5p mature miRNA
Sequence	6 - UUUUCUCCUUCCCCCCGGAGUU - 27
Evidence	experimental cloned [1], Northern [1], Illumina [2]

Mature mdv1-miR-M9-3p

Accession	MIMAT0005980
Description	Mareks disease virus type 1 mdv1-miR-M9-3p mature miRNA
Sequence	46 - AAACUCCGAGGGCAGGAAAAAG - 67
Evidence	experimental cloned [1], Northern [1], Illumina [2]

References

PubMed ID: 18256158
MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
"Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
"J Virol (2008) 82:4007-4015

PubMed ID: 18842708
Sequence conservation and differential expression of Marek's disease virus microRNAs
"Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J"
"J Virol (2008) 82:12213-12220