Stem-loop gga-mir-24

Accession

MI0001275

Description

Gallus gallus gga-mir-24 precursor miRNA mir-24

Gene
family

RF00178; mir-24

Literature search

10 open access papers mention gga-mir-24
(16 sentences)

Sequence

155319 reads, 1782 reads per million, 5 experiments

cuccgGUGCCUACUGAGCUGAUAUCAGUucugauuuuacauacUGGCUCAGUUCAGCAGGAACAGgag
((((.((.(((.(((((((((..(((((..((......)).))))).))))))))).))).)).))))

Structure

    g  G   A         UA     uc  au 
cucc GU CCU CUGAGCUGA  UCAGU  ug  u
|||| || ||| |||||||||  |||||  ||   
gagG CA GGA GACUUGACU  GGUca  ac  u
    A  A   C         -C     -u  au 

Annotation confidence High

Genome context

chrZ: 41649935-41650002 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-24

Mature gga-miR-24-3p

• Accession: MIMAT0001188
• Description: Gallus gallus gga-miR-24-3p mature miRNA
• Sequence: 44 - UGGCUCAGUUCAGCAGGAACAG - 65
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-24-5p

• Accession: MIMAT0026548
• Description: Gallus gallus gga-miR-24-5p mature miRNA
• Sequence: 6 - GUGCCUACUGAGCUGAUAUCAGU - 28
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45