Stem-loop gga-mir-3540

Accession

MI0015394

Description

Gallus gallus gga-mir-3540 precursor miRNA

Sequence

2436 reads, 5.0 reads per million, 183 experiments

aggaaAUGGUGGAAGAACAAGGCCUGCccgcgagguaagggcAGGGCCUGCUUCCUCCACCU
.......((((((.(((..((((((((((.........))))).)))))..))).)))))).

Structure

aggaaAU      A   CA     -     gcg 
       GGUGGA GAA  AGGCC UGCcc   a
       |||||| |||  ||||| |||||   g
       CCACCU CUU  UCCGG Acggg   g
------U      C   CG     G     aau 

Annotation confidence Medium

Genome context

10: 11084037-11084098 [+]

Mature gga-miR-3540-5p

• Accession: MIMAT0016391
• Description: Gallus gallus gga-miR-3540-5p mature miRNA
• Sequence: 6 - AUGGUGGAAGAACAAGGCCUGC - 27
• Evidence: experimental ; Illumina [1]

Mature gga-miR-3540-3p

• Accession: MIMAT0051287
• Description: Gallus gallus gga-miR-3540-3p mature miRNA
• Sequence: 43 - AGGGCCUGCUUCCUCCACCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512