Stem-loop gga-mir-3524a

Accession

MI0015376

Description

Gallus gallus gga-mir-3524a precursor miRNA

Sequence

20 reads, 1 reads per million, 5 experiments

cuggauuaucuuuaaggucccuaccaacccggaccauucuaugauucucugauucuaaaaguuaucaCAGAAUCGCAGAAUGGCUGAGGcugaaagagacaucuggauccaucugg
((((((.((((.....(((.((..((.(((((.(((((((.(((((((.((((..........)))).))))))).)))))))))).)).))..)).)))....))))..))))))

Structure

      -u    uuaag   c  ac  a  -   a       a       c    ucua 
cuggau  aucu     guc cu  ca cc cgg ccauucu ugauucu ugau    a
||||||  ||||     ||| ||  || || ||| ||||||| ||||||| ||||     
ggucua  uagg     cag ga  gu GG GUC GGUAAGA GCUAAGA acua    a
      cc    -ucua   a  aa  c  A   -       C       C    uuga 

Annotation confidence Low

Genome context

chr1: 105832017-105832132 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-3524a

Mature gga-miR-3524a

• Accession: MIMAT0016374
• Description: Gallus gallus gga-miR-3524a mature miRNA
• Sequence: 68 - CAGAAUCGCAGAAUGGCUGAGG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512