Stem-loop gga-mir-146c

Accession

MI0007561

Description

Gallus gallus gga-mir-146c precursor miRNA

Literature search

14 open access papers mention gga-mir-146c
(28 sentences)

Sequence

1850464 reads, 28908 reads per million, 5 experiments

gaagaugugacgaaucuuggcaguucccagcucUGAGAACUGAAUUCCAUGGACUGguuucaauuccaugcguucAGUCCAUGGUAUUCAGUUCUCUagcuuggcugcaucaaacuucacaacugcuaa
..((.(((((.........((((((...((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))).))))))........))))).)).....

Structure

---ga  a     cgaaucuug      ccc    cU           U           uuu  au 
     ag uguga         gcaguu   agcu  GAGAACUGAAU CCAUGGACUGg   ca  u
     || |||||         ||||||   ||||  ||||||||||| |||||||||||   ||   
     uc acacu         cgucgg   ucga  CUCUUGACUUA GGUACCUGAcu   gu  c
aaucg  a     -ucaaacua      --u    -U           U           ugc  ac 

Annotation confidence High

Genome context

chr4: 89315822-89315950 [-]

Mature gga-miR-146c-3p

• Accession: MIMAT0007736
• Description: Gallus gallus gga-miR-146c-3p mature miRNA
• Sequence: 76 - AGUCCAUGGUAUUCAGUUCUCU - 97
• Evidence: experimental ; Illumina [1]

Mature gga-miR-146c

• Accession: MIMAT0007735
• Description: Gallus gallus gga-miR-146c mature miRNA
• Sequence: 34 - UGAGAACUGAAUUCCAUGGACUG - 56

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964