Stem-loop gga-mir-146c

Accession

MI0007561

Description

Gallus gallus gga-mir-146c precursor miRNA

Literature search

18 open access papers mention gga-mir-146c
(33 sentences)

Sequence

53046839 reads, 24862.0 reads per million, 260 experiments

gaagaugugacgaaucuuggcaguucccagcucUGAGAACUGAAUUCCAUGGACUGguuucaauuccaugcguucaGUCCAUGGUAUUCAGUUCUCUAgcuuggcugcaucaaacuucacaacugcuaa
..((.(((((.........((((((...((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))).))))))........))))).)).....

Structure

---ga  a     cgaaucuug      ccc    cU           U           uuu  au 
     ag uguga         gcaguu   agcu  GAGAACUGAAU CCAUGGACUGg   ca  u
     || |||||         ||||||   ||||  ||||||||||| |||||||||||   ||   
     uc acacu         cgucgg   ucgA  CUCUUGACUUA GGUACCUGacu   gu  c
aaucg  a     -ucaaacua      --u    -U           U           ugc  ac 

Annotation confidence High

Genome context

4: 88337567-88337695 [-]

Mature gga-miR-146c-5p

• Accession: MIMAT0007735
• Description: Gallus gallus gga-miR-146c-5p mature miRNA
• Sequence: 34 - UGAGAACUGAAUUCCAUGGACUG - 56
• Evidence: experimental ; Illumina [1]

Mature gga-miR-146c-3p

• Accession: MIMAT0007736
• Description: Gallus gallus gga-miR-146c-3p mature miRNA
• Sequence: 77 - GUCCAUGGUAUUCAGUUCUCUA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964