Stem-loop gga-mir-34b

Accession

MI0001260

Description

Gallus gallus gga-mir-34b precursor miRNA mir-34

Gene
family

RF00456; mir-34

Literature search

7 open access papers mention gga-mir-34b
(122 sentences)

Sequence

17000 reads, 289 reads per million, 5 experiments

gugcuugguuugCAGGCAGUGUAGUUAGCUGAUUGuacccagcgccccacAAUCACUAAAUUCACUGCCAUCaaaacaaggcac
(((((((..(((..(((((((...((((.(((((((............)))))))))))...)))))))..)))..))).))))

Structure

    -   gu   CA       UAG    C       accca 
gugc uug  uug  GGCAGUG   UUAG UGAUUGu     g
|||| |||  |||  |||||||   |||| |||||||      
cacg aac  aaC  CCGUCAC   AAUC ACUAAca     c
    g   aa   UA       UUA    -       ccccg 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr24: 5539134-5539217 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-34b

Mature gga-miR-34b-5p

• Accession: MIMAT0001179
• Description: Gallus gallus gga-miR-34b-5p mature miRNA
• Sequence: 13 - CAGGCAGUGUAGUUAGCUGAUUG - 35
• Evidence: experimental ; Illumina [2]

Mature gga-miR-34b-3p

• Accession: MIMAT0026540
• Description: Gallus gallus gga-miR-34b-3p mature miRNA
• Sequence: 51 - AAUCACUAAAUUCACUGCCAUC - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45