Stem-loop gga-mir-449c

Accession

MI0007445

Description

Gallus gallus gga-mir-449c precursor miRNA

Literature search

5 open access papers mention gga-mir-449c
(8 sentences)

Sequence

13 reads, 1 reads per million, 2 experiments

guggucUGGCAGUGCGUGUUAGCUGGCUGUugucccaagguaccaaCAGCUGCUCACGGCACUCCAGAcugc
(((((((((.(((((.(((.(((.((((((((.((...))...))))))))))).)))))))))))))))))

Structure

         C     G   U   U        --u  c 
guggucUGG AGUGC UGU AGC GGCUGUug   cc  
||||||||| ||||| ||| ||| ||||||||   || a
cgucAGACC UCACG GCA UCG UCGACaac   gg  
         -     -   C   -        cau  a 

Annotation confidence Not enough data

Genome context

chrZ: 16704099-16704170 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-449c

Mature gga-miR-449c-5p

• Accession: MIMAT0007602
• Description: Gallus gallus gga-miR-449c-5p mature miRNA
• Sequence: 7 - UGGCAGUGCGUGUUAGCUGGCUGU - 30
• Evidence: experimental ; Illumina [1]

Mature gga-miR-449c-3p

• Accession: MIMAT0007603
• Description: Gallus gallus gga-miR-449c-3p mature miRNA
• Sequence: 47 - CAGCUGCUCACGGCACUCCAGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964