Stem-loop gga-mir-449b

Accession

MI0007566

Description

Gallus gallus gga-mir-449b precursor miRNA

Literature search

4 open access papers mention gga-mir-449b
(8 sentences)

Sequence

5 reads, 3 reads per million, 2 experiments

ccuguggcuggaAGGCAGUGUGCUGUUAGCGGCUGcugugcugaauggagCAGUCACUACCACACUGCCACcugcugcagggauagacuacugc
((((((((.((..(((((((((..((.((.(((((((.(.......).))))))).))))))))))))).)).)))))))).............

Structure

-------------        u  aA         CU  U  C       g gc 
             ccuguggc gg  GGCAGUGUG  GU AG GGCUGcu u  u
             |||||||| ||  |||||||||  || || ||||||| |  g
             ggacgucg cC  CCGUCACAC  CA UC CUGACga g  a
cgucaucagauag        u  -A         --  -  A       g ua 

Annotation confidence Not enough data

Genome context

chrZ: 16703096-16703189 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-449b

Mature gga-miR-449b-5p

• Accession: MIMAT0007743
• Description: Gallus gallus gga-miR-449b-5p mature miRNA
• Sequence: 13 - AGGCAGUGUGCUGUUAGCGGCUG - 35
• Evidence: experimental ; Illumina [1]

Mature gga-miR-449b-3p

• Accession: MIMAT0007744
• Description: Gallus gallus gga-miR-449b-3p mature miRNA
• Sequence: 51 - CAGUCACUACCACACUGCCAC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964