Stem-loop gga-mir-3529

Accession

MI0015380

Description

Gallus gallus gga-mir-3529 precursor miRNA

Sequence

1212 reads, 21 reads per million, 5 experiments

ggccgugcgcccuaAGGCAGACUGUGACUUGUUGUggugggaugagccauacaacaacaaaaucacuagucuuccagagggcaccgcggcc
(((((((.(((((..((.(((((((((.(((((((.((((......))))...)))))))..)))).))))).))..)))))..)))))))

Structure

       -c     aA  C     -    -C       --g    ga 
ggccgug  gcccu  GG AGACU GUGA  UUGUUGU   gugg  u
|||||||  |||||  || ||||| ||||  |||||||   ||||   
ccggcgc  cggga  cc ucuga cacu  aacaaca   uacc  g
       ca     ga  u     u    aa       aca    ga 

Annotation confidence Low

Genome context

chr10: 13134724-13134814 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-3529

Mature gga-miR-3529

• Accession: MIMAT0016378
• Description: Gallus gallus gga-miR-3529 mature miRNA
• Sequence: 15 - AGGCAGACUGUGACUUGUUGU - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512