Stem-loop gga-mir-3532

Accession

MI0015385

Description

Gallus gallus gga-mir-3532 precursor miRNA

Literature search

0 open access papers mention gga-mir-3532
(0 sentences)

Sequence

1363 reads, 14 reads per million, 5 experiments

ugugcuucucacGUUGCACUGCAGCUGCUCUUGGgcuuaauuaaucugacccUUGGAGGCUGCAGUGUCAUGGUguaaagcaca
(((((((..(((..(((((((((((..((((.(((.(((.......))))))..))))))))))))).))..)))..)))))))

Structure

       cu   GU  -         UG    -U   c   au 
ugugcuu  cac  UG CACUGCAGC  CUCU  GGg uua  u
|||||||  |||  || |||||||||  ||||  ||| |||  a
acacgaa  gUG  AC GUGACGUCG  GAGG  ccc agu  a
       au   GU  U         --    UU   -   cu 

Annotation confidence Low

Genome context

chr5: 32991425-32991508 [-]

Mature gga-miR-3532-3p

• Accession: MIMAT0016383
• Description: Gallus gallus gga-miR-3532-3p mature miRNA
• Sequence: 53 - UUGGAGGCUGCAGUGUCAUGGU - 74
• Evidence: experimental ; Illumina [1-2]

Mature gga-miR-3532-5p

• Accession: MIMAT0027031
• Description: Gallus gallus gga-miR-3532-5p mature miRNA
• Sequence: 13 - GUUGCACUGCAGCUGCUCUUGG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45