Stem-loop gga-mir-3523

Accession

MI0015375

Description

Gallus gallus gga-mir-3523 precursor miRNA

Sequence

93 reads, 1 reads per million, 5 experiments

gccgagccgaacggagccgagcggcggggccauggugaaccugcgggugugugcgcuggagugcgaggcgcugcgggggcugcugcaggagcgcgCCGCGCAGUGCCUCGUCCUCGAcugccgcuccuucuucuccuucaacgccgcgcacauccgcggcuccugc
...((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((.(((((((((((((((.((.(((.....))))).)).))))))))))))).))).).)))))).))).)))).))..)..)))))).....))))))))))....

Structure

-gcc      aa    gccga      gg ccau  u   ccu c   u   u   c g   u             -  g  u   g 
    gagccg  cgga     gcggcg  g    gg gaa   g ggg gug gcg u gag gcgaggcgcugcg gg gc gcu c
    ||||||  ||||     ||||||  |    || |||   | ||| ||| ||| | ||| ||||||||||||| || || ||| a
    cucggc  gccu     cgccgc  c    cc cuu   c ucc cgc cgu A CUC UGCUCCGUGACGC CC cg cga g
cguc      --    acacg      aa --uu  u   --- u   u   -   c G   C             G  g  -   g 

Annotation confidence Low

Genome context

chr13: 9054476-9054641 [-]

Mature gga-miR-3523

• Accession: MIMAT0016373
• Description: Gallus gallus gga-miR-3523 mature miRNA
• Sequence: 96 - CCGCGCAGUGCCUCGUCCUCGA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512