Stem-loop gga-mir-3523

Accession

MI0015375

Description

Gallus gallus gga-mir-3523 precursor miRNA

Sequence

86794 reads, 55.0 reads per million, 245 experiments

gccgagccgaacggagccgagcggcggggccauggugaaccugcgggugugugcgcugGAGUGCGAGGCGCUGCGGGGGCUgcugcaggagcgcgCCGCGCAGUGCCUCGUCCUCGAcugccgcuccuucuucuccuucaacgccgcgcacauccgcggcuccugc
...((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((.(((((((((((((((.((.(((.....))))).)).))))))))))))).))).).)))))).))).)))).))..)..)))))).....))))))))))....

Structure

-gcc      aa    gccga      gg ccau  u   ccu c   u   u   c g   U             -  G  U   g 
    gagccg  cgga     gcggcg  g    gg gaa   g ggg gug gcg u GAG GCGAGGCGCUGCG GG GC gcu c
    ||||||  ||||     ||||||  |    || |||   | ||| ||| ||| | ||| ||||||||||||| || || ||| a
    cucggc  gccu     cgccgc  c    cc cuu   c ucc cgc cgu A CUC UGCUCCGUGACGC CC cg cga g
cguc      --    acacg      aa --uu  u   --- u   u   -   c G   C             G  g  -   g 

Annotation confidence High

Genome context

13: 8666897-8667062 [-]

Mature gga-miR-3523-5p

• Accession: MIMAT0051275
• Description: Gallus gallus gga-miR-3523-5p mature miRNA
• Sequence: 59 - GAGUGCGAGGCGCUGCGGGGGCU - 81
• Evidence: experimental ; Illumina [1]

Mature gga-miR-3523-3p

• Accession: MIMAT0016373
• Description: Gallus gallus gga-miR-3523-3p mature miRNA
• Sequence: 96 - CCGCGCAGUGCCUCGUCCUCGA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512