miRBase entry: gga-mir-3538

Stem-loop gga-mir-3538


Accession
MI0015391
Description
Gallus gallus gga-mir-3538 precursor miRNA


Sequence

519 reads, 12 reads per million, 5 experiments
gcaGUUCGGUGAUGAAACCAUGGAauaagcgcugggcacagcgccugacauccgugaggagucguuccaugcugc
(((((..((.(((((..(((((((.((.((((((....)))))).))...)))))).)...)))))))..)))))

Structure
     UC  U     -AA -      --a  a      g 
gcaGU  GG GAUGA   C CAUGGA   ua gcgcug g
|||||  || |||||   | ||||||   || ||||||  
cgucg  cc uugcu   g gugccu   gu cgcgac c
     ua  -     gag a      aca  c      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature gga-miR-3538

Accession MIMAT0016389
Description Gallus gallus gga-miR-3538 mature miRNA
Sequence 4 - GUUCGGUGAUGAAACCAUGGA - 24
Evidence

References

  1. PubMed ID: 19891781
    Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
    Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
    BMC Genomics (2009) 10:512