Stem-loop gga-mir-3538

Accession

MI0015391

Description

Gallus gallus gga-mir-3538 precursor miRNA

Literature search

1 open access papers mention gga-mir-3538
(3 sentences)

Sequence

419472 reads, 306.0 reads per million, 223 experiments

gcaGUUCGGUGAUGAAACCAUGGAAUaagcgcugggcacagcgccugacauccguGAGGAGUCGUUCCAUGCUGC
(((((..((.(((((..(((((((.((.((((((....)))))).))...)))))).)...)))))))..)))))

Structure

     UC  U     -AA -      --A  a      g 
gcaGU  GG GAUGA   C CAUGGA   Ua gcgcug g
|||||  || |||||   | ||||||   || ||||||  
CGUCG  CC UUGCU   G Gugccu   gu cgcgac c
     UA  -     GAG A      aca  c      a 

Annotation confidence Not enough data

Genome context

1: 50734470-50734544 [+]

Mature gga-miR-3538-3p

• Accession: MIMAT0051285
• Description: Gallus gallus gga-miR-3538-3p mature miRNA
• Sequence: 56 - GAGGAGUCGUUCCAUGCUGC - 75

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512