miRBase entry: gga-mir-302a

Stem-loop gga-mir-302a

Accession

MI0001211

Description

Gallus gallus gga-mir-302a precursor miRNA

Literature search

12 open access papers mention gga-mir-302a
(38 sentences)

Sequence

188 reads, 2.0 reads per million, 53 experiments

ccacaACUUAAAUGUGGAUGUGCUUGCUUuguucugaaaagaAAGUGCUUCCAUGUUUUAGUGAugg
(((..(((.(((((((((.((((((.((((.......)))).)))))).))))))))).)))..)))

Structure

   ca   U         U      G    gu 
cca  ACU AAAUGUGGA GUGCUU CUUu  u
|||  ||| ||||||||| |||||| ||||  c
ggu  UGA UUUGUACCU CGUGAA gaaa  u
   AG   U         U      a    ag

Annotation confidence High

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

4: 56602240-56602306 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-302a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-302a-5p

Accession	MIMAT0051209
Description	Gallus gallus gga-miR-302a-5p mature miRNA
Sequence	6 - ACUUAAAUGUGGAUGUGCUUGCUU - 29
Evidence	not_experimental

Mature gga-miR-302a-3p

Accession	MIMAT0001143
Description	Gallus gallus gga-miR-302a-3p mature miRNA
Sequence	43 - AAGUGCUUCCAUGUUUUAGUGA - 64
Evidence	not_experimental

References

PubMed ID: 15592404
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
"International Chicken Genome Sequencing Consortium"
"Nature (2004) 432:695-716