Stem-loop gga-mir-3536

Accession

MI0015389

Description

Gallus gallus gga-mir-3536 precursor miRNA

Literature search

1 open access papers mention gga-mir-3536
(4 sentences)

Sequence

27810 reads, 21.0 reads per million, 193 experiments

gcuaugCUGCAUACGAGUAGACCCUUUCUgacucugccuguagucguaaaggggggacaauguaugcaacagcaaagc
(((.(((((((((((.((...((((((.((((((.....).))))).))))))...))..)))))))...)))).)))

Structure

   a    ---       -A  AGA      C     - u 
gcu ugCU   GCAUACG  GU   CCCUUU Ugacu c g
||| ||||   |||||||  ||   |||||| ||||| | c
cga acga   cguaugu  ca   gggaaa gcuga g c
   a    caa       aa  ggg      u     u u 

Annotation confidence Not enough data

Genome context

25: 1911161-1911238 [+]

Mature gga-miR-3536-5p

• Accession: MIMAT0016387
• Description: Gallus gallus gga-miR-3536-5p mature miRNA
• Sequence: 7 - CUGCAUACGAGUAGACCCUUUCU - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512