Stem-loop gga-mir-3534

Accession

MI0015387

Description

Gallus gallus gga-mir-3534 precursor miRNA

Sequence

162 reads, 1.0 reads per million, 90 experiments

ugggacugggggggUGUGGGUUGACAGUGCUGAGGUcuccccaagccCCCGAGCUCUGCUGCCCCACAUCUcccccccccca
((((...(((((((((((((....(((.(((..(((........)))....))).)))....)))))))))))))...))))

Structure

    acu             UUGA   U   --GA   cuc 
uggg   gggggggUGUGGG    CAG GCU    GGU   c
||||   |||||||||||||    ||| |||    |||    
accc   ccccUCUACACCC    GUC CGA    ccg   c
    ccc             CGUC   U   GCCC   aac 

Annotation confidence High

Genome context

34: 2427703-2427783 [-]

Mature gga-miR-3534-5p

• Accession: MIMAT0016385
• Description: Gallus gallus gga-miR-3534-5p mature miRNA
• Sequence: 15 - UGUGGGUUGACAGUGCUGAGGU - 36
• Evidence: experimental ; Illumina [1]

Mature gga-miR-3534-3p

• Accession: MIMAT0051282
• Description: Gallus gallus gga-miR-3534-3p mature miRNA
• Sequence: 48 - CCCGAGCUCUGCUGCCCCACAUCU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512