Stem-loop gga-mir-3535

Accession

MI0015388

Description

Gallus gallus gga-mir-3535 precursor miRNA

Literature search

2 open access papers mention gga-mir-3535
(4 sentences)

Sequence

2016 reads, 54 reads per million, 5 experiments

ugcuGGAUAUGAUGACUGAUUAUCUGAAAugcugaugaaaccacuucuaaaguccucuagauagucaagugcugauccagca
((((((((..(...((((((((((((....(((...(((.....)))...)))....))))))))).))).)..))))))))

Structure

        AU AUG   -         AAAu   gau   a 
ugcuGGAU  G   ACU GAUUAUCUG    gcu   gaa c
||||||||  |   ||| |||||||||    |||   ||| c
acgaccua  c   uga cugauagau    uga   cuu a
        gu --g   a         cucc   aau   c 

Annotation confidence Not enough data

Genome context

chr9: 15324645-15324726 [-]

Mature gga-miR-3535

• Accession: MIMAT0016386
• Description: Gallus gallus gga-miR-3535 mature miRNA
• Sequence: 5 - GGAUAUGAUGACUGAUUAUCUGAAA - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512