Stem-loop gga-mir-429

Accession

MI0003714

Description

Gallus gallus gga-mir-429 precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

8 open access papers mention gga-mir-429
(16 sentences)

Sequence

25881 reads, 346 reads per million, 5 experiments

gccugcugauugcUGUCUUACCAGGCAAAGUUAGAucuagcuauuucugucUAAUACUGUCUGGUAAUGCCGUcaaucgcaugg
.(((((.((((((.((.((((((((((..(((((((..((......)))))))))..)))))))))).)).).)))))))).))

Structure

g  -   u     - U  C          AA       cu  cu 
 cc ugc gauug c GU UUACCAGGCA  GUUAGAu  ag  a
 || ||| ||||| | || ||||||||||  |||||||  ||   
 gg acg cuaac G CG AAUGGUCUGU  UAAUcug  uc  u
-  u   -     U C  U          CA       --  uu 

Annotation confidence Medium

Genome context

chr21: 2589432-2589515 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-429

Mature gga-miR-429-3p

• Accession: MIMAT0003371
• Description: Gallus gallus gga-miR-429-3p mature miRNA
• Sequence: 52 - UAAUACUGUCUGGUAAUGCCGU - 73
• Evidence: experimental ; Illumina [1]

Mature gga-miR-429-5p

• Accession: MIMAT0026635
• Description: Gallus gallus gga-miR-429-5p mature miRNA
• Sequence: 14 - UGUCUUACCAGGCAAAGUUAGA - 35
• Evidence: experimental ; Illumina [1]

References

1. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45