Stem-loop gga-mir-2188

Accession

MI0015374

Description

Gallus gallus gga-mir-2188 precursor miRNA mir-2188

Gene
family

RF03255; mir-2188

Literature search

5 open access papers mention gga-mir-2188
(24 sentences)

Sequence

10159 reads, 123 reads per million, 5 experiments

gagguuagauggcacuuugggguuuccuucugaggaauaucagaccugugggaAAGGUCCAACCUCACAUGUCCUguauagaauaaggaggGAUAUAUGUGGUCAGACCUAUCccacaggcccuguauucuuacacaagugcagagaccuugacaugccaucugaucuu
((((((((((((((..(((((((((((((.(((((((((.(((.(((((((((.(((((..(((.((.(((((((..............))))))).)).)))..))))).)))))))))..)))))))))).)).)))....))))))))))..))))))))))))))

Structure

              cu          ----   c  -       u   -a         A     CA   U  C       guauag 
gagguuagauggca  uugggguuuc    cuu ug aggaaua cag  ccuguggga AGGUC  ACC CA AUGUCCU      a
||||||||||||||  ||||||||||    ||| || ||||||| |||  ||||||||| |||||  ||| || |||||||       
uucuagucuaccgu  aguuccagag    gaa ac uucuuau guc  ggacaccCU UCCAG  UGG GU UAUAGgg      a
              ac          acgu   c  a       -   cc         A     AC   U  A       aggaau 

Annotation confidence High

Genome context

chr22: 2664305-2664473 [-]

Mature gga-miR-2188-5p

• Accession: MIMAT0016372
• Description: Gallus gallus gga-miR-2188-5p mature miRNA
• Sequence: 54 - AAGGUCCAACCUCACAUGUCCU - 75
• Evidence: experimental ; Illumina [1-2]

Mature gga-miR-2188-3p

• Accession: MIMAT0027028
• Description: Gallus gallus gga-miR-2188-3p mature miRNA
• Sequence: 92 - GAUAUAUGUGGUCAGACCUAUC - 113
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45