Stem-loop gga-mir-3528

Accession

MI0015379

Description

Gallus gallus gga-mir-3528 precursor miRNA

Sequence

11 reads, 1 reads per million, 2 experiments

gcauuacacaggucCAUGCCCCAGUCGUGUUGCAGAuauggcuguagugccauguuugugucauuagguggcagaaaggaaaaggcugugucuuugc
(((..((((((.(((.((((((....(((..(((((((((((......)))))))))))..)))..)).))))....))....).))))))...)))

Structure

   -uu      g ----  ---A    -  AGUC   UU           ug 
gca   acacag u    cC    UGCC CC    GUG  GCAGAuauggc  u
|||   |||||| |    ||    |||| ||    |||  |||||||||||   
cgu   uguguc g    gg    acgg gg    uac  uguuuguaccg  a
   uuc      g aaaa  aaag    u  --au   ug           ug 

Annotation confidence Not enough data

Genome context

chr17: 8208158-8208254 [+]

Mature gga-miR-3528

• Accession: MIMAT0016377
• Description: Gallus gallus gga-miR-3528 mature miRNA
• Sequence: 15 - CAUGCCCCAGUCGUGUUGCAGA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512