Stem-loop gga-mir-1798

Accession

MI0007542

Description

Gallus gallus gga-mir-1798 precursor miRNA

Literature search

2 open access papers mention gga-mir-1798
(4 sentences)

Sequence

26 reads, 1 reads per million, 4 experiments

cucauaauuaguuuuauucaguuAACGUGACACUUUAGAAAACcuguaaugcuauaagUGGUUUUCAGAAGUGUAGCGUUuaugggauaaagugag
(((((.......(((((((.((.(((((.(((((((.(((((((...............))))))).))))))).))))).)).))))))))))))

Structure

     aauuagu       a  u     G       A       uguaau 
cucau       uuuauuc gu AACGU ACACUUU GAAAACc      g
|||||       ||||||| || ||||| ||||||| |||||||      c
gagug       aaauagg ua UUGCG UGUGAAG CUUUUGG      u
     -------       g  u     A       A       Ugaaua 

Annotation confidence Not enough data

Genome context

chr20: 9880673-9880768 [-]

Mature gga-miR-1798-5p

• Accession: MIMAT0007713
• Description: Gallus gallus gga-miR-1798-5p mature miRNA
• Sequence: 24 - AACGUGACACUUUAGAAAAC - 43
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1798-3p

• Accession: MIMAT0007714
• Description: Gallus gallus gga-miR-1798-3p mature miRNA
• Sequence: 59 - UGGUUUUCAGAAGUGUAGCGUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964