Stem-loop gga-mir-3539

Accession

MI0015393

Description

Gallus gallus gga-mir-3539 precursor miRNA

Sequence

3263 reads, 2.0 reads per million, 183 experiments

cuccuugCAGAGGAAGACUGAUGCUAGUUauuuguuucccacugaCUGCCUCAUGUCCUCCUCUAGgggag
((((((..((((((.((((((.((.(((((..((.....)).))))))).))).))).)))))).))))))

Structure

      gC      A   -   U  U     uu  u 
cuccuu  AGAGGA GAC UGA GC AGUUa  ug u
||||||  |||||| ||| ||| || |||||  || u
gagggG  UCUCCU CUG ACU CG UCagu  ac c
      -A      C   U   C  -     -c  c 

Annotation confidence High

Genome context

1: 80817451-80817521 [+]

Mature gga-miR-3539-5p

• Accession: MIMAT0016390
• Description: Gallus gallus gga-miR-3539-5p mature miRNA
• Sequence: 8 - CAGAGGAAGACUGAUGCUAGUU - 29
• Evidence: experimental ; Illumina [1]

Mature gga-miR-3539-3p

• Accession: MIMAT0051286
• Description: Gallus gallus gga-miR-3539-3p mature miRNA
• Sequence: 46 - CUGCCUCAUGUCCUCCUCUAG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512