Stem-loop gga-mir-3525

Accession

MI0015384

Description

Gallus gallus gga-mir-3525 precursor miRNA

Literature search

4 open access papers mention gga-mir-3525
(14 sentences)

Sequence

45602 reads, 31.0 reads per million, 233 experiments

gucucuuucagccuCAGCCAUUCUGCGAUUCUGUGAuaacuuuuagaaucAGAGAAUCAUAGAAUGGUCCGGguugguagggac
((((((.(((((((..(((((((((.((((((.((((..........)))).)))))).)))))))))..))))))).))))))

Structure

      u       CA         C      G    aacu 
gucucu ucagccu  GCCAUUCUG GAUUCU UGAu    u
|||||| |||||||  ||||||||| |||||| ||||     
caggga gguugGG  UGGUAAGAU CUAAGA Acua    u
      u       CC         A      G    agau 

Annotation confidence High

Genome context

1: 105926199-105926282 [+]

Mature gga-miR-3525-5p

• Accession: MIMAT0016382
• Description: Gallus gallus gga-miR-3525-5p mature miRNA
• Sequence: 15 - CAGCCAUUCUGCGAUUCUGUGA - 36
• Evidence: experimental ; Illumina [1]

Mature gga-miR-3525-3p

• Accession: MIMAT0061078
• Description: Gallus gallus gga-miR-3525-3p mature miRNA
• Sequence: 51 - AGAGAAUCAUAGAAUGGUCCGG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512