Stem-loop gga-mir-3531

Accession

MI0015383

Description

Gallus gallus gga-mir-3531 precursor miRNA

Literature search

1 open access papers mention gga-mir-3531
(3 sentences)

Sequence

180 reads, 3 reads per million, 5 experiments

uugcagaucaaagccUCCUUGUUUGGGUUGUAAUGAagugucgaacuguuuCCUUGCAACACAAACAGGAGACAcuuugaucugcaa
.((((((((((((.(((((.(((((.(((((((.(((((.....)))...)).))))))).))))))))))...)))))))))))).

Structure

u            --c     U     G       U  ---   g 
 ugcagaucaaag   cUCCU GUUUG GUUGUAA GA   agu u
 ||||||||||||   ||||| ||||| ||||||| ||   ||| c
 acgucuaguuuc   GAGGA CAAAC CAACGUU Cu   uca g
a            ACA     -     A       C  uug   a 

Annotation confidence High

Genome context

chr23: 443912-443998 [-]

Mature gga-miR-3531-5p

• Accession: MIMAT0016381
• Description: Gallus gallus gga-miR-3531-5p mature miRNA
• Sequence: 16 - UCCUUGUUUGGGUUGUAAUGA - 36
• Evidence: experimental ; Illumina [1-2]

Mature gga-miR-3531-3p

• Accession: MIMAT0027030
• Description: Gallus gallus gga-miR-3531-3p mature miRNA
• Sequence: 52 - CCUUGCAACACAAACAGGAGACA - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45