Stem-loop chi-mir-219

Accession

MI0030695

Description

Capra hircus chi-mir-219 precursor miRNA

Literature search

17 open access papers mention chi-mir-219
(80 sentences)

Sequence

381 reads, 1.0 reads per million, 35 experiments

acucaggggcuucgccacUGAUUGUCCAAACGCAAUUCUuguacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUggcugagc
........((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).))))

Structure

acucaggg    c     U   U     AA           uac a   u 
        gcuu gccac GAU GUCCA  CGCAAUUCUug   g guc  
        |||| ||||| ||| |||||  |||||||||||   | ||| g
        cgag cggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
--------    u     U   -     CG           caa -   c 

Annotation confidence High

Genome context

chr11: 101987090-101987180 [-]

Mature chi-miR-219-5p

• Accession: MIMAT0036067
• Description: Capra hircus chi-miR-219-5p mature miRNA
• Sequence: 19 - UGAUUGUCCAAACGCAAUUCU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-219-3p

• Accession: MIMAT0058956
• Description: Capra hircus chi-miR-219-3p mature miRNA
• Sequence: 62 - AGAAUUGUGGCUGGACAUCUGU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40