Stem-loop egr-mir-219

Accession

MI0017790

Description

Echinococcus granulosus egr-mir-219 precursor miRNA

Literature search

5 open access papers mention egr-mir-219
(6 sentences)

Sequence

291344 reads, 25400.0 reads per million, 13 experiments

agugcucUGAUUGUCCAUUCGCAUUUCUUGcugcucucguguacaauucacugcucuucaAGAUGUGUGUAUGGGCAUCGCAguacu
((((((.((((.((((((.(((((.(((((..(..(..(((.......))).)..)..))))).))))).)))))))))).))))))

Structure

      c    U      U     U     cu cu uc   ua 
agugcu UGAU GUCCAU CGCAU UCUUG  g  c  gug  c
|||||| |||| |||||| ||||| |||||  |  |  |||  a
ucaugA GCUA CGGGUA GUGUG AGAac  c  g  cac  a
      C    -      U     U     uu uc -u   uu 

Annotation confidence High

Genome context

APAU02000015.1: 1031605-1031691 [-]

Mature egr-miR-219-5p

• Accession: MIMAT0020246
• Description: Echinococcus granulosus egr-miR-219-5p mature miRNA
• Sequence: 8 - UGAUUGUCCAUUCGCAUUUCUUG - 30
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-219-3p

• Accession: MIMAT0037430
• Description: Echinococcus granulosus egr-miR-219-3p mature miRNA
• Sequence: 61 - AGAUGUGUGUAUGGGCAUCGCA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83