Stem-loop dre-mir-219-3

Accession

MI0002054

Description

Danio rerio dre-mir-219-3 precursor miRNA mir-219

Gene
family

RF00251; mir-219

Literature search

7 open access papers mention dre-mir-219-3
(23 sentences)

Sequence

5608 reads, 300 reads per million, 6 experiments

cuucucuuuuaaguucaucugucugguuugauacugacggucaggugcUGAUUGUCCAAACGCAAUUCUUgugcuugugugaaacaGGAGUUGUGGAUGGACAUCACGCuccugucugguccucacaucuacaggaugggccaaguaaag
............((((((((....(((.(((......(((.((((.((((((.(((((..((((((((((((...........))))))))))))..))))))))).)).)))).)))....))).)))....)))))))).........

Structure

cuucucuuuuaa        gucu   u   uacuga   u    u  -    U     AA            gcuu 
            guucaucu    ggu uga      cgg cagg gc UGAU GUCCA  CGCAAUUCUUgu    g
            ||||||||    ||| |||      ||| |||| || |||| |||||  ||||||||||||    u
            cggguagg    cua acu      guc gucc CG ACUA CAGGU  GUGUUGAGGaca    g
---gaaaugaac        acau   c   --ccug   u    u  C    -     AG            aagu 

Annotation confidence Medium

Genome context

chr19: 18861739-18861888 [-]

Mature dre-miR-219-5p

• Accession: MIMAT0001286
• Description: Danio rerio dre-miR-219-5p mature miRNA
• Sequence: 49 - UGAUUGUCCAAACGCAAUUCUU - 70
• Evidence: experimental ; cloned [1]

Mature dre-miR-219-3p

• Accession: MIMAT0031989
• Description: Danio rerio dre-miR-219-3p mature miRNA
• Sequence: 87 - GGAGUUGUGGAUGGACAUCACGC - 109
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293