Stem-loop rno-mir-219b

Accession

MI0015462

Description

Rattus norvegicus rno-mir-219b precursor miRNA

Literature search

29 open access papers mention rno-mir-219b
(223 sentences)

Sequence

677 reads, 2.0 reads per million, 234 experiments

agaccggagcucaaccacAGAUGUCCAGCCACAAUUCUCGguuggccgcagacucguacaAGAAUUGCGUUUGGACAAUCAGUggugaagccccugaguu
.....((.(((..(((((.(((((((((.(.((((((((((((.......))).))....))))))).).)))))).))).)))))..))).))......

Structure

-agacc  a   ca     A   -      C A       ----  -   gg 
      gg gcu  accac GAU GUCCAG C CAAUUCU    CG guu  c
      || |||  ||||| ||| |||||| | |||||||    || |||  c
      cc cga  uggUG CUA CAGGUU G GUUAAGA    gc cag  g
uugagu  c   ag     A   A      U C       acau  u   ac 

Annotation confidence High

Genome context

chr3: 8407427-8407526 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-219b

Mature rno-miR-219b-5p

• Accession: MIMAT0017882
• Description: Rattus norvegicus rno-miR-219b-5p mature miRNA
• Sequence: 19 - AGAUGUCCAGCCACAAUUCUCG - 40
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-219b-3p

• Accession: MIMAT0061432
• Description: Rattus norvegicus rno-miR-219b-3p mature miRNA
• Sequence: 61 - AGAAUUGCGUUUGGACAAUCAGU - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249