Stem-loop eca-mir-219b

Accession

MI0012923

Description

Equus caballus eca-mir-219b precursor miRNA

Literature search

1 open access papers mention eca-mir-219b
(1 sentences)

Sequence

4646 reads, 77.0 reads per million, 131 experiments

acucaggggcuucgccacUGAUUGUCCAAACGCAAUUCUUGuacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUggcugagcuccggg
.(((.(((((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).))))))))))

Structure

a   a       c     U   U     AA           uac a   u 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUUG   g guc  
 ||| ||||||| ||||| ||| |||||  |||||||||||   | ||| g
 ggg ccucgag cggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
-   -       u     U   -     CG           caa -   c 

Annotation confidence High

Genome context

25: 32252430-32252526 [-]

Mature eca-miR-219b-5p

• Accession: MIMAT0060810
• Description: Equus caballus eca-miR-219b-5p mature miRNA
• Sequence: 19 - UGAUUGUCCAAACGCAAUUCUUG - 41
• Evidence: experimental ; Illumina [1]

Mature eca-miR-219b-3p

• Accession: MIMAT0051427
• Description: Equus caballus eca-miR-219b-3p mature miRNA
• Sequence: 62 - AGAAUUGUGGCUGGACAUCUGU - 83
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131