miRBase entry: hsa-mir-219b

Stem-loop hsa-mir-219b


Accession
MI0017299
Symbol
HGNC: MIR219B
Description
Homo sapiens hsa-mir-219b precursor miRNA mir-219
Gene
family?
RF00251; mir-219

Literature search
70 open access papers mention hsa-mir-219b
(245 sentences)

Sequence

149932 reads, 21 reads per million, 66 experiments
ggagcucagccacAGAUGUCCAGCCACAAUUCUCGguuggccgcagacucguacaAGAAUUGCGUUUGGACAAUCAGUggcgaagccc
((.(((..(((((.(((((((((.(.((((((((((((.......))).))....))))))).).)))))).))).)))))..)))))

Structure
  a   ca     A   -      C A       ----  -   gg 
gg gcu  gccac GAU GUCCAG C CAAUUCU    CG guu  c
|| |||  ||||| ||| |||||| | |||||||    || |||  c
cc cga  cggUG CUA CAGGUU G GUUAAGA    gc cag  g
  -   ag     A   A      U C       acau  u   ac 


Annotation confidence High
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Genome context
chr9: 128392621-128392708 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-219b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-219b-5p

Accession MIMAT0019747
Description Homo sapiens hsa-miR-219b-5p mature miRNA
Sequence 14 - AGAUGUCCAGCCACAAUUCUCG - 35
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature hsa-miR-219b-3p

Accession MIMAT0019748
Description Homo sapiens hsa-miR-219b-3p mature miRNA
Sequence 56 - AGAAUUGCGUUUGGACAAUCAGU - 78
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 21199797
    Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
    "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
    "Cancer Res (2011) 71:78-86

  2. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52