Stem-loop cfa-mir-219-1

Accession

MI0008007

Description

Canis lupus familiaris cfa-mir-219-1 precursor miRNA

Literature search

1 open access papers mention cfa-mir-219-1
(2 sentences)

Sequence

35109 reads, 68.0 reads per million, 75 experiments

UGAUUGUCCAAACGCAAUUCUcgagucucuggcucuggccgAGAGUUGAGUCUGGACGUCCCG
.(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))...

Structure

--U   U     A  G         a   ucu 
   GAU GUCCA AC CAAUUCUcg guc   g
   ||| ||||| || ||||||||| |||   g
   CUG CAGGU UG GUUGAGAgc cgg   c
GCC   -     C  A         -   ucu 

Annotation confidence High

Genome context

12: 3001662-3001724 [+]

Mature cfa-miR-219-5p

• Accession: MIMAT0006611
• Description: Canis lupus familiaris cfa-miR-219-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-219-1-3p

• Accession: MIMAT0051720
• Description: Canis lupus familiaris cfa-miR-219-1-3p mature miRNA
• Sequence: 42 - AGAGUUGAGUCUGGACGUCCCG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415