Stem-loop dre-mir-2189

Accession

MI0010851

Description

Danio rerio dre-mir-2189 precursor miRNA

Literature search

1 open access papers mention dre-mir-2189
(6 sentences)

Sequence

331284 reads, 995.0 reads per million, 269 experiments

ugcacaguuuugaucccgcccaaauugaacACAGCUGAUGCAACCAAUCAAauugguaacuauuuuUGAUUGUUUGUAUCAGCUGUGUuuuaguuagggcuucuucgucc
...........((....((((.(((((((((((((((((((((.((((((((.(((...)))..)))))))).)))))))))))))).))))))).))))....))....

Structure

ugcacaguuuu  uccc    a       -              C        -u   u 
           ga    gccc aauugaa cACAGCUGAUGCAA CAAUCAAa  ugg  
           ||    |||| ||||||| |||||||||||||| ||||||||  ||| a
           cu    cggg uugauuu GUGUCGACUAUGUU GUUAGUuu  auc  
-------ccug  ucuu    a       U              U        uu   a 

Annotation confidence High

Genome context

KN150127.1: 17150-17259 [+]

Mature dre-miR-2189-5p

• Accession: MIMAT0052802
• Description: Danio rerio dre-miR-2189-5p mature miRNA
• Sequence: 31 - ACAGCUGAUGCAACCAAUCAA - 51
• Evidence: experimental ; 454 [1]

Mature dre-miR-2189-3p

• Accession: MIMAT0011311
• Description: Danio rerio dre-miR-2189-3p mature miRNA
• Sequence: 67 - UGAUUGUUUGUAUCAGCUGUGU - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195