Stem-loop dre-mir-122

Accession

MI0001965

Description

Danio rerio dre-mir-122 precursor miRNA mir-122

Gene
family

RF00684; mir-122

Literature search

100 open access papers mention dre-mir-122
(609 sentences)

Sequence

1177734 reads, 3286.0 reads per million, 265 experiments

uccagagcugUGGAGUGUGACAAUGGUGUUUGuaucaucugucgucaAACGCCAUUAUCACACUAAAUAgccacgg
.((...(((((..(((((((.(((((((((((.............))))))))))).)))))))..)))))...))

Structure

u  aga     GG       C           uauca 
 cc   gcugU  AGUGUGA AAUGGUGUUUG     u
 ||   |||||  ||||||| |||||||||||     c
 gg   cgAUA  UCACACU UUACCGCAAac     u
-  cac     AA       A           ugcug 

Annotation confidence High

Genome context

chr21: 10881423-10881498 [-]

Mature dre-miR-122-5p

• Accession: MIMAT0001818
• Description: Danio rerio dre-miR-122-5p mature miRNA
• Sequence: 11 - UGGAGUGUGACAAUGGUGUUUG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-122-3p

• Accession: MIMAT0052761
• Description: Danio rerio dre-miR-122-3p mature miRNA
• Sequence: 48 - AACGCCAUUAUCACACUAAAUA - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293