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mir-122 family (RF00684)

Summary
miR-122 is miRNA precursor family MIPF:MIPF0000095 that appears to be vertebrate specific. In mammals, miR-122 is enriched in liver cells where it has been implicated as a regulator of fatty-acid metabolism in mouse studies. The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequence is excised from the 5' arm of the hairpin [1,2,3]. This family represents the microRNA (miRNA) precursor mir-122 imported from miRBase [4].

There are 32 hairpins in the mir-122 family

Name Accession RPM Chromosome Start End Strand Confidence
mmu-mir-122 MI0000256 6121 18 65381932 65381997 + High
hsa-mir-122 MI0000442 3777 chr18 58451074 58451158 + High
rno-mir-122 MI0000891 3864 chr18 60755285 60755369 + High
gga-mir-122-1 MI0001277 771 Z 1089910 1089986 + High
gga-mir-122-2 MI0001280 771 W 7599933 7600009 - High
dre-mir-122 MI0001965 145 chr21 10881423 10881498 - High
ssc-mir-122 MI0002413 4 chr1 179916336 179916420 - High
fru-mir-122 MI0003315 - ref|NC_042290.1| 5514257 5514322 + High
tni-mir-122 MI0003316 - 4 6516669 6516734 + -
xtr-mir-122 MI0004824 - 1 201700027 201700095 - -
bta-mir-122 MI0005063 143 24 57588139 57588223 + High
mdo-mir-122 MI0005287 18 ref|NC_077229.2| 103093615 103093688 - High
oan-mir-122 MI0006679 30 3 72516039 72516149 + -
mml-mir-122a MI0007613 88 18 21749547 21749631 - High
cfa-mir-122 MI0008015 - 1 17474133 17474190 - High
ptr-mir-122 MI0008431 - chr18 55851820 55851903 + High
eca-mir-122 MI0012747 2 8 79152582 79152647 + High
tgu-mir-122 MI0013742 - chrZ_random 328161 328232 + -
ppy-mir-122 MI0014815 - chr18 71133225 71133309 + -
rno-mir-122b MI0015471 1 chr18 60755272 60755380 - -
aca-mir-122 MI0018719 - GL343213.1 2690944 2691028 + -
ola-mir-122 MI0019484 - 12 9243561 9243670 + High
cgr-mir-122 MI0020383 104 JH000659.1 638593 638672 - -
ggo-mir-122 MI0020726 - chr18 55767345 55767453 + High
pol-mir-122 MI0022197 - None None -
ccr-mir-122 MI0023311 - None None -
ipu-mir-122 MI0024469 - None None -
ssa-mir-122-1 MI0026450 - None None High
ssa-mir-122-2 MI0026451 - None None High
chi-mir-122 MI0030600 - chr24 60739784 60739878 + High
tch-mir-122 MI0031189 - KB320389.1 2600243 2600299 + High
oha-mir-122 MI0031322 - AZIM01005362.1 15232 15306 + -



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