Stem-loop cfa-mir-122

Accession

MI0008015

Description

Canis lupus familiaris cfa-mir-122 precursor miRNA

Literature search

27 open access papers mention cfa-mir-122
(58 sentences)

Sequence

450005 reads, 4706.0 reads per million, 74 experiments

UGGAGUGUGACAAUGGUGUUUGuguccaaacuaucaAACGCCAUUAUCACACUAAAUA
...(((((((.(((((((((((............))))))))))).))))))).....

Structure

--UGG       C           ugucc 
     AGUGUGA AAUGGUGUUUG     a
     ||||||| |||||||||||      
     UCACACU UUACCGCAAac     a
AUAAA       A           uauca 

Annotation confidence High

Genome context

1: 17474133-17474190 [-]

Mature cfa-miR-122-5p

• Accession: MIMAT0006619
• Description: Canis lupus familiaris cfa-miR-122-5p mature miRNA
• Sequence: 1 - UGGAGUGUGACAAUGGUGUUUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-122-3p

• Accession: MIMAT0051728
• Description: Canis lupus familiaris cfa-miR-122-3p mature miRNA
• Sequence: 37 - AACGCCAUUAUCACACUAAAUA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415