Stem-loop oan-mir-122

Accession

MI0006679

Description

Ornithorhynchus anatinus oan-mir-122 precursor miRNA

Literature search

2 open access papers mention oan-mir-122
(9 sentences)

Sequence

1397 reads, 32.0 reads per million, 5 experiments

aaccuuggauuguuugcuaccagagcugUGGAGUGUGACAAUGGUGUUUGUguccagucuaucaAACGCCAUUAUCACACUAAAUAgcuacuguagggccauccgucucuu
......((((.(((..((((.((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))))))))).)))).......

Structure

-aaccuu    u   ug    c  -      GG       C           Ugucc 
       ggau guu  cuac ag agcugU  AGUGUGA AAUGGUGUUUG     a
       |||| |||  |||| || ||||||  ||||||| |||||||||||      
       ccua cgg  gaug uc ucgAUA  UCACACU UUACCGCAAac     g
uucucug    c   --    -  a      AA       A           uaucu 

Annotation confidence Not enough data

Genome context

3: 72516039-72516149 [+]

Mature oan-miR-122-5p

• Accession: MIMAT0006825
• Description: Ornithorhynchus anatinus oan-miR-122-5p mature miRNA
• Sequence: 29 - UGGAGUGUGACAAUGGUGUUUGU - 51
• Evidence: experimental ; Illumina [1]

Mature oan-miR-122-3p

• Accession: MIMAT0006826
• Description: Ornithorhynchus anatinus oan-miR-122-3p mature miRNA
• Sequence: 65 - AACGCCAUUAUCACACUAAAUA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004