Stem-loop chi-mir-122

Accession

MI0030600

Description

Capra hircus chi-mir-122 precursor miRNA

Literature search

109 open access papers mention chi-mir-122
(323 sentences)

Sequence

2635736 reads, 7730.0 reads per million, 36 experiments

ccuuagcagagcugUGGAGUGUGACAAUGGUGUUUGuguccaaacuaucaAACGCCAUUAUCACACUAAAUagcuacuguuaggcaauccuuccc
.((((((((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))))))))...........

Structure

----------c        -      GG       C           ugucc 
           cuuagcag agcugU  AGUGUGA AAUGGUGUUUG     a
           |||||||| ||||||  ||||||| |||||||||||      
           ggauuguc ucgaUA  UCACACU UUACCGCAAac     a
cccuuccuaac        a      AA       A           uauca 

Annotation confidence High

Genome context

chr24: 60739784-60739878 [+]

Mature chi-miR-122-5p

• Accession: MIMAT0035918
• Description: Capra hircus chi-miR-122-5p mature miRNA
• Sequence: 15 - UGGAGUGUGACAAUGGUGUUUG - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-122-3p

• Accession: MIMAT0058935
• Description: Capra hircus chi-miR-122-3p mature miRNA
• Sequence: 51 - AACGCCAUUAUCACACUAAAU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40