Stem-loop ola-mir-122

Accession

MI0019484

Description

Oryzias latipes ola-mir-122 precursor miRNA

Literature search

4 open access papers mention ola-mir-122
(16 sentences)

Sequence

546816 reads, 5043.0 reads per million, 43 experiments

gcagcaaaccuuguccuccagagcugUGGAGUGUGACAAUGGUGUUUGuuuccugccuaucaAACGCCAUUAUCACACUAAAUAgcuacagugugaaaaagccucaguuu
((.....((.((((.......((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))))))).))......))........

Structure

--------  -agcaa  c    ccuccag      GG       C           uuucc 
        gc      ac uugu       agcugU  AGUGUGA AAUGGUGUUUG     u
        ||      || ||||       ||||||  ||||||| |||||||||||      
        cg      ug gaca       ucgAUA  UCACACU UUACCGCAAac     g
uuugacuc  aaaaag  u    -------      AA       A           uaucc 

Annotation confidence High

Genome context

12: 9243561-9243670 [+]

Mature ola-miR-122-5p

• Accession: MIMAT0057122
• Description: Oryzias latipes ola-miR-122-5p mature miRNA
• Sequence: 27 - UGGAGUGUGACAAUGGUGUUUG - 48
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-122-3p

• Accession: MIMAT0022604
• Description: Oryzias latipes ola-miR-122-3p mature miRNA
• Sequence: 63 - AACGCCAUUAUCACACUAAAUA - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8