Stem-loop mdo-mir-122

Accession

MI0005287

Description

Monodelphis domestica mdo-mir-122 precursor miRNA

Literature search

2 open access papers mention mdo-mir-122
(10 sentences)

Sequence

1110 reads, 20.0 reads per million, 5 experiments

cagagcuaUGGAGUGUGACAAUGGUGUUUGUguccagucuaucaAACGCCAUUAUCACACUAAAUAgcuacugu
(((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))).

Structure

-   -      GG       C           Ugucc 
 cag agcuaU  AGUGUGA AAUGGUGUUUG     a
 ||| ||||||  ||||||| |||||||||||      
 guc ucgAUA  UCACACU UUACCGCAAac     g
u   a      AA       A           uaucu 

Annotation confidence High

Genome context

ref|NC_077229.2|: 103093615-103093688 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-122

Mature mdo-miR-122-5p

• Accession: MIMAT0004101
• Description: Monodelphis domestica mdo-miR-122-5p mature miRNA
• Sequence: 9 - UGGAGUGUGACAAUGGUGUUUGU - 31
• Evidence: experimental ; PCR [1], Illumina [2]

Mature mdo-miR-122-3p

• Accession: MIMAT0026659
• Description: Monodelphis domestica mdo-miR-122-3p mature miRNA
• Sequence: 45 - AACGCCAUUAUCACACUAAAUA - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45