Stem-loop eca-mir-122

Accession

MI0012747

Description

Equus caballus eca-mir-122 precursor miRNA

Literature search

36 open access papers mention eca-mir-122
(326 sentences)

Sequence

9143401 reads, 8973.0 reads per million, 188 experiments

agcugUGGAGUGUGACAAUGGUGUUUGuguccaaacuaucaAACGCCAUUAUCACACUAAAUAGcu
((((((..(((((((.(((((((((((............))))))))))).)))))))..))))))

Structure

      GG       C           ugucc 
agcugU  AGUGUGA AAUGGUGUUUG     a
||||||  ||||||| |||||||||||      
ucGAUA  UCACACU UUACCGCAAac     a
      AA       A           uauca 

Annotation confidence High

Genome context

8: 79152582-79152647 [+]

Mature eca-miR-122-5p

• Accession: MIMAT0012995
• Description: Equus caballus eca-miR-122-5p mature miRNA
• Sequence: 6 - UGGAGUGUGACAAUGGUGUUUG - 27
• Evidence: not_experimental

Mature eca-miR-122-3p

• Accession: MIMAT0051371
• Description: Equus caballus eca-miR-122-3p mature miRNA
• Sequence: 42 - AACGCCAUUAUCACACUAAAUAG - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131