Stem-loop ggo-mir-122

Accession

MI0020726

Description

Gorilla gorilla ggo-mir-122 precursor miRNA

Literature search

4 open access papers mention ggo-mir-122
(5 sentences)

Sequence

5457900 reads, 305676.0 reads per million, 4 experiments

gaguuuccuuagcagagcugUGGAGUGUGACAAUGGUGUUUGugucuaaacuaucaAACGCCAUUAUCACACUAAAUagcuacugcuaggcaauccuucccucgauaaa
.......((((((((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))))))))...................

Structure

------------gaguuuc        -      GG       C           ugucu 
                   cuuagcag agcugU  AGUGUGA AAUGGUGUUUG     a
                   |||||||| ||||||  ||||||| |||||||||||      
                   ggaucguc ucgaUA  UCACACU UUACCGCAAac     a
aaauagcucccuuccuaac        a      AA       A           uauca 

Annotation confidence High

Genome context

chr18: 55767345-55767453 [+]

Mature ggo-miR-122-5p

• Accession: MIMAT0024179
• Description: Gorilla gorilla ggo-miR-122-5p mature miRNA
• Sequence: 21 - UGGAGUGUGACAAUGGUGUUUG - 42
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-122-3p

• Accession: MIMAT0061333
• Description: Gorilla gorilla ggo-miR-122-3p mature miRNA
• Sequence: 57 - AACGCCAUUAUCACACUAAAU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116