miRBase entry: dre-mir-429a

Stem-loop dre-mir-429a

Accession

MI0001720

Description

Danio rerio dre-mir-429a precursor miRNA mir-8

Gene
family?

RF00241; mir-8

Literature search

13 open access papers mention dre-mir-429a
(56 sentences)

Sequence

465927 reads, 684.0 reads per million, 264 experiments

cuuguugauggacGUCUUACCAGACAUGGUUAGAuguaauaacuugugucUAAUACUGUCUGGUAAUGCCGUccaucacaug
..(((.((((((((.(((((((((((..(((((((((((....)))))))))))..)))))))))).).)))))))))))..

Structure

cu   u        U -          UG           u 
  ugu gauggacG C UUACCAGACA  GUUAGAuguaa a
  ||| |||||||| | ||||||||||  |||||||||||  
  aca cuaccUGC G AAUGGUCUGU  UAAUcuguguu a
gu   -        C U          CA           c

Annotation confidence High

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Genome context

chr23: 24073815-24073896 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-429a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-429a-5p

Accession	MIMAT0052743
Description	Danio rerio dre-miR-429a-5p mature miRNA
Sequence	14 - GUCUUACCAGACAUGGUUAGA - 34
Evidence	not_experimental

Mature dre-miR-429a-3p

Accession	MIMAT0001624
Description	Danio rerio dre-miR-429a-3p mature miRNA
Sequence	51 - UAAUACUGUCUGGUAAUGCCGU - 72
Evidence	not_experimental
Database links
Predicted targets

References

PubMed ID: 15891114
Clustering and conservation patterns of human microRNAs
"Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
"Nucleic Acids Res (2005) 33:2697-2706