Stem-loop dre-mir-430i-1

Accession

MI0002139

Description

Danio rerio dre-mir-430i-1 precursor miRNA miR-430

Gene
family

RF01413; miR-430

Literature search

38 open access papers mention dre-mir-430i-1
(190 sentences)

Sequence

531958 reads, 4859.0 reads per million, 195 experiments

gucucuaucgguACCCUCACAAAAGCACUGACUUUGAugcuguauuuggUAAGUGCUAUUUGUUGGCGUAGUuucaagugac
(((.((...(.(((((..(((((((((((.(((..((((...)))).))).)))))).))))).)).))).)....)).)))

Structure

   u  -auc g   -  UC     -      G   UU    c 
guc cu    g uAC CC  ACAAA AGCACU ACU  GAug  
||| ||    | ||| ||  ||||| |||||| |||  |||| u
cag ga    U AUG GG  UGUUU UCGUGA Ugg  uuau  
   u  acuu G   C  -U     A      A   -u    g 

Annotation confidence High

Genome context

chr4: 28699661-28699742 [+]

Clustered miRNAs

57 other miRNAs are < 10 kb from dre-mir-430i-1

Mature dre-miR-430i-5p

• Accession: MIMAT0032003
• Description: Danio rerio dre-miR-430i-5p mature miRNA
• Sequence: 13 - ACCCUCACAAAAGCACUGACUUUGA - 37
• Evidence: not_experimental

Mature dre-miR-430i-3p

• Accession: MIMAT0001880
• Description: Danio rerio dre-miR-430i-3p mature miRNA
• Sequence: 50 - UAAGUGCUAUUUGUUGGCGUAGU - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293