Stem-loop dre-mir-126a

Accession

MI0001979

Description

Danio rerio dre-mir-126a precursor miRNA mir-126

Gene
family

RF00701; mir-126

Literature search

15 open access papers mention dre-mir-126a
(67 sentences)

Sequence

13135 reads, 779 reads per million, 10 experiments

gagccauuuuaacugcuucacagucCAUUAUUACUUUUGGUACGCGcuaggccagacucaaacUCGUACCGUGAGUAAUAAUGCacuguggcaguggguuu
(((((......(((((..((((((.(((((((((((.(((((((.(..((......))....).))))))).))))))))))).))))))))))).)))))

Structure

     auuuua     uu      c           U       C --cu  gc 
gagcc      acugc  cacagu CAUUAUUACUU UGGUACG G    ag  c
|||||      |||||  |||||| ||||||||||| ||||||| |    ||   
uuugg      ugacg  guguca GUAAUAAUGAG GCCAUGC c    uc  a
     -----g     --      C           U       U aaac  ag 

Annotation confidence High

Genome context

chr8: 11548419-11548519 [-]

Mature dre-miR-126a-5p

• Accession: MIMAT0003157
• Description: Danio rerio dre-miR-126a-5p mature miRNA
• Sequence: 26 - CAUUAUUACUUUUGGUACGCG - 46
• Evidence: experimental ; array [2]

Mature dre-miR-126a-3p

• Accession: MIMAT0001823
• Description: Danio rerio dre-miR-126a-3p mature miRNA
• Sequence: 64 - UCGUACCGUGAGUAAUAAUGC - 84
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311