Stem-loop dre-mir-196b

Accession

MI0002036

Description

Danio rerio dre-mir-196b precursor miRNA

Literature search

20 open access papers mention dre-mir-196b
(59 sentences)

Sequence

138317 reads, 209.0 reads per million, 220 experiments

gucugugauuUAGGUAGUUUCAAGUUGUUGGGcuggacguuuaauuucACAGGAACCUGAAACUGCCUGAAuugcucca
....((((((((((((((((((.(((.(((...((((........))))))).))).))))))))))))))))))....

Structure

gucu                  A   G   GGc    cgu 
    gugauuUAGGUAGUUUCA GUU UUG   ugga   u
    |||||||||||||||||| ||| |||   ||||    
    cguuAAGUCCGUCAAAGU CAA GAC   Acuu   u
accu                  C   G   ---    uaa 

Annotation confidence High

Genome context

chr3: 23673377-23673455 [+]

Mature dre-miR-196b-5p

• Accession: MIMAT0001860
• Description: Danio rerio dre-miR-196b-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAAGUUGUUGGG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-196b-3p

• Accession: MIMAT0060896
• Description: Danio rerio dre-miR-196b-3p mature miRNA
• Sequence: 49 - ACAGGAACCUGAAACUGCCUGAA - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293