Stem-loop dre-mir-133c

Accession

MI0001995

Description

Danio rerio dre-mir-133c precursor miRNA

Literature search

24 open access papers mention dre-mir-133c
(81 sentences)

Sequence

101361 reads, 260.0 reads per million, 209 experiments

gaaacacggcuuaguugcUGGUAAAACGGAACCAAGUCGgguguuugcgagaggUUUGGUCCCUUUCAACCAGCUacugcgccgugaauuc
....((((((.((((.((((((..((.((.(((((((((.(....).)))....)))))).)).))..)))))).)))).)))))).....

Structure

-gaaa      u    u      AA  C  A      ----   g u 
     cacggc uagu gcUGGU  AA GG ACCAAG    UCG g g
     |||||| |||| ||||||  || || ||||||    ||| |  
     gugccg guca CGACCA  UU CC UGGUUU    agc u u
cuuaa      c    U      AC  U  C      ggag   g u 

Annotation confidence High

Genome context

chr17: 5962975-5963065 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-133c

Mature dre-miR-133c-5p

• Accession: MIMAT0031971
• Description: Danio rerio dre-miR-133c-5p mature miRNA
• Sequence: 19 - UGGUAAAACGGAACCAAGUCG - 39
• Evidence: not_experimental

Mature dre-miR-133c-3p

• Accession: MIMAT0001832
• Description: Danio rerio dre-miR-133c-3p mature miRNA
• Sequence: 55 - UUUGGUCCCUUUCAACCAGCU - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293