Stem-loop dre-let-7f-1

Accession

MI0001872

Description

Danio rerio dre-let-7f-1 precursor miRNA

Literature search

62 open access papers mention dre-let-7f-1
(252 sentences)

Sequence

2397524 reads, 2373.0 reads per million, 291 experiments

ugguaaugcuugugcagugUGAGGUAGUAGAUUGUAUAGUUguaggguagugauuuuauccuguguagaagauaaCUAUACAAUCUAUUGCCUUCCcugaggggcagaaauacaca
......(((((.(.(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))).)))))..........

Structure

----ugguaa     g g   u U                       ---------       u 
          ugcuu u cag g GAGGUAGUAGAUUGUAUAGUUgu         aggguag g
          ||||| | ||| | |||||||||||||||||||||||         ||||||| a
          acggg a guc C UUCCGUUAUCUAACAUAUCaaua         uccuauu u
acacauaaag     g -   - C                       gaagaugug       u 

Annotation confidence High

Genome context

chr11: 27503017-27503132 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7f-1

Mature dre-let-7f-5p

• Accession: MIMAT0001764
• Description: Danio rerio dre-let-7f-5p mature miRNA
• Sequence: 20 - UGAGGUAGUAGAUUGUAUAGUU - 41
• Evidence: experimental ; cloned [1]

Mature dre-let-7f-3p

• Accession: MIMAT0052748
• Description: Danio rerio dre-let-7f-3p mature miRNA
• Sequence: 76 - CUAUACAAUCUAUUGCCUUCC - 96
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293