Stem-loop dre-let-7j

Accession

MI0003343

Description

Danio rerio dre-let-7j precursor miRNA

Literature search

40 open access papers mention dre-let-7j
(195 sentences)

Sequence

964056 reads, 1004.0 reads per million, 259 experiments

gguUGAGGUAGUUGUUUGUACAGUUuuuagggucuguuauucugcccuguuaaggagcuaaCUGUACAGACUACUGCCUUGCC
(((.((((((((.((((((((((((..((((((..(.....).))))))..........)))))))))))).)))))))))))

Structure

   U        U            --------uu      cu u 
ggu GAGGUAGU GUUUGUACAGUU          uagggu  g u
||| |||||||| ||||||||||||          ||||||  | a
CCG UUCCGUCA CAGACAUGUCaa          gucccg  c u
   -        U            ucgaggaauu      -u u 

Annotation confidence High

Comments

This zebrafish miRNA sequence is predicted based on homology with a verified mammalian sequence (Mihaela Zavolan, personal communication).

Genome context

chr6: 41454791-41454873 [+]

Mature dre-let-7j-5p

• Accession: MIMAT0003015
• Description: Danio rerio dre-let-7j-5p mature miRNA
• Sequence: 4 - UGAGGUAGUUGUUUGUACAGUU - 25
• Evidence: not_experimental

Mature dre-let-7j-3p

• Accession: MIMAT0060901
• Description: Danio rerio dre-let-7j-3p mature miRNA
• Sequence: 62 - CUGUACAGACUACUGCCUUGCC - 83
• Evidence: not_experimental

References