miRBase entry: dre-let-7a-4

Stem-loop dre-let-7a-4

Accession

MI0001861

Description

Danio rerio dre-let-7a-4 precursor miRNA

Literature search

44 open access papers mention dre-let-7a-4
(317 sentences)

Sequence

28068073 reads, 24201.0 reads per million, 305 experiments

gcgaugucucgggaUGAGGUAGUAGGUUGUAUAGUUUagaguuacaacacgggagauaaCUGUACAGCCUCCUAGCUUUCCucgagcagacgc
(((.((.(((((((.(((.(((.(((((((((((((.....................))))))))))))).))).)))))).))))))..)))

Structure

   -a  u    -   U   G   U             Uagaguuac 
gcg  ug cucg gga GAG UAG AGGUUGUAUAGUU         a
|||  || |||| ||| ||| ||| |||||||||||||         a
cgc  ac gagc CCU UUC AUC UCCGACAUGUCaa         c
   ag  -    u   -   G   C             uagagggca

Annotation confidence High

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Genome context

chr5: 29990452-29990544 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-let-7a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-let-7a-5p

Accession	MIMAT0001759
Description	Danio rerio dre-let-7a-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUAGUUU - 37
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-let-7a-4-3p

Accession	MIMAT0052746
Description	Danio rerio dre-let-7a-4-3p mature miRNA
Sequence	60 - CUGUACAGCCUCCUAGCUUUCC - 81
Evidence	experimental cloned [1]

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293